Rv3862c - c.-16T>C
Drug resistance types
48 Sensitive
0 RR-TB
70 HR-TB
67 MDR-TB
21 Pre-XDR-TB
1 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 199 |
| lineage2.2.1;lineage4.2.2 | 1 |
| lineage4.5 | 2 |
| lineage3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.8 | 3 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2.1;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 217 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28868397 | Sensitive | lineage2.2.1 | None | SRR21732271 | HR-TB | lineage2.2.1 | None | DRR185068 | HR-TB | lineage2.2.1 | vn | DRR185076 | MDR-TB | lineage2.2.1 | vn | DRR185077 | HR-TB | lineage2.2.1 | vn | DRR185081 | HR-TB | lineage2.2.1 | vn | DRR185086 | HR-TB | lineage2.2.1 | vn | ERR13439896 | HR-TB | lineage2.2.1 | None | SRR29052836 | Sensitive | lineage2.2.1 | None | SRR5067549 | HR-TB | lineage2.2.1 | vn | SRR5067222 | MDR-TB | lineage2.2.1 | vn | SRR5073982 | MDR-TB | lineage2.2.1 | vn | SAMN03246234 | MDR-TB | lineage2.2.1 | cn | SRR5073839 | HR-TB | lineage2.2.1 | vn | ERR4810825 | Sensitive | lineage2.2.1 | cn | SRR25207041 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969838 | Sensitive | lineage2.2.1 | None | ERR13439880 | HR-TB | lineage2.2.1 | None | SRR21732538 | Other | lineage2.2.1 | None | SRR26937137 | MDR-TB | lineage2.2.1 | None | SRR21685370 | Sensitive | lineage2.2.1 | None | SRR26937096 | MDR-TB | lineage2.2.1 | None | SRR26399843 | MDR-TB | lineage2.2.1 | None | SRR24827288 | HR-TB | lineage2.2.1 | None | ERR7737699 | MDR-TB | lineage2.2.1 | None | ERR11049129 | HR-TB | lineage2.2.1 | None | SRR16370454 | MDR-TB | lineage2.2.1 | None | SRR25206924 | XDR-TB | lineage2.2.1 | None | ERR9119389 | MDR-TB | lineage2.2.1 | None | SRR28858727 | Pre-XDR-TB | lineage2.2.1 | None | ERR552550 | HR-TB | lineage2.2.1 | None | ERR13290584 | MDR-TB | lineage2.2.1 | None | SRR28858726 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399521 | HR-TB | lineage2.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR13290582 | MDR-TB | lineage2.2.1 | None | SRR26937083 | Other | lineage2.2.1;lineage4.2.2 | None | SRR18911989 | Sensitive | lineage2.2.1 | None | SRR20969822 | Sensitive | lineage4.5 | None | ERR13267135 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290583 | MDR-TB | lineage2.2.1 | None | ERR11081363 | MDR-TB | lineage2.2.1 | None | SRR12199392 | Sensitive | lineage2.2.1 | None | SRR28858560 | Pre-XDR-TB | lineage2.2.1 | None | SRR26112566 | Sensitive | lineage2.2.1 | None | SRR20969771 | Sensitive | lineage2.2.1 | None | SRR25515350 | Sensitive | lineage2.2.1 | None | SRR26937011 | MDR-TB | lineage2.2.1 | None | SRR5065436 | HR-TB | lineage2.2.1 | None | SRR26399430 | MDR-TB | lineage2.2.1 | None | SRR26937026 | MDR-TB | lineage2.2.1 | None | ERR4819924 | Sensitive | lineage3 | gb | SRR20969984 | Pre-XDR-TB | lineage2.2.1 | None | DRR130183 | Pre-XDR-TB | lineage4.3.3 | None | ERR13291309 | HR-TB | lineage2.2.1 | None | SRR16058467 | HR-TB | lineage2.2.1 | None | SRR28858670 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399548 | HR-TB | lineage2.2.1 | None | SRR10040543 | MDR-TB | lineage2.2.1 | None | DRR261048 | HR-TB | lineage2.2.1 | None | DRR454968 | Pre-XDR-TB | lineage2.2.1 | None | ERR751959 | Sensitive | lineage2.2.1 | th | SRR30182858 | Sensitive | lineage2.2.1 | None | ERR502905 | Sensitive | lineage2.2.1 | None | ERR4810549 | Sensitive | lineage4.5 | cn | ERR4818807 | Sensitive | lineage4.1.2.1 | None | SRR1710089 | Sensitive | lineage2.2.1 | cn | SRR1710094 | Sensitive | lineage2.2.1 | cn | ERR2517049 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2513263 | Sensitive | lineage4.1.2.1 | gb | ERR2513441 | Pre-XDR-TB | lineage2.2.1 | gb | SRR8237384 | HR-TB | lineage2.2.1 | ch | SRR26937129 | MDR-TB | lineage2.2.1 | None | DRR184632 | MDR-TB | lineage2.2.1 | vn | DRR185001 | HR-TB | lineage2.2.1 | vn | DRR185005 | HR-TB | lineage2.2.1 | vn | DRR185017 | HR-TB | lineage2.2.1 | vn | SRR14270075 | Sensitive | lineage2.2.1 | None | SRR14782797 | Sensitive | lineage4.8 | None | SRR15316369 | MDR-TB | lineage2.2.1 | None | SRR5067490 | Other | lineage2.2.1 | vn | SRR5067556 | HR-TB | lineage2.2.1 | vn | SRR5067520 | HR-TB | lineage2.2.1 | vn | SRR26936989 | MDR-TB | lineage2.2.1;lineage4 | None | SRR5067447 | HR-TB | lineage2.2.1 | vn | SRR5067579 | HR-TB | lineage2.2.1 | vn | DRR454970 | MDR-TB | lineage2.2.1 | None | SRR5073906 | Sensitive | lineage2.2.1 | vn | SRR5073661 | Other | lineage2.2.1 | vn | SRR5073543 | HR-TB | lineage2.2.1 | vn | SRR5074112 | Other | lineage2.2.1 | vn | ERR13292394 | Sensitive | lineage2.2.1 | None | SRR26937003 | MDR-TB | lineage2.2.1 | None | SRR1723471 | MDR-TB | lineage2.2.1 | None | DRR185056 | HR-TB | lineage2.2.1 | None | ERR4816178 | Sensitive | lineage4.1.2.1 | None | SRR8217913 | HR-TB | lineage2.2.1 | None | SRR22251805 | Sensitive | lineage2.2.1 | None | SRR1723474 | MDR-TB | lineage2.2.1 | cn | SRR1723473 | MDR-TB | lineage2.2.1 | cn | ERR4816937 | Sensitive | lineage4.1.2.1 | None | ERR3275776 | HR-TB | lineage2.2.1 | nl | ERR7737911 | HR-TB | lineage2.2.1 | None | SRR10040434 | Pre-XDR-TB | lineage2.2.1 | None | DRR474121 | HR-TB | lineage2.2.1 | None | SRR8217925 | HR-TB | lineage2.2.1 | None | SRR21277010 | Sensitive | lineage2.2.1 | None | SRR8217914 | MDR-TB | lineage2.2.1 | None | SRR22251424 | HR-TB | lineage2.2.1 | None | SRR8217912 | HR-TB | lineage2.2.1 | None | SRR26936962 | MDR-TB | lineage2.2.1 | None | SRR26399647 | MDR-TB | lineage2.2.1 | None | ERR552551 | HR-TB | lineage2.2.1 | None | SRR11972339 | Other | lineage2.2.1 | None | SRR22251228 | HR-TB | lineage2.2.1 | None | SRR26937110 | MDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR22251361 | Sensitive | lineage2.2.1 | None | SRR1162825 | MDR-TB | lineage2.2.1 | None | ERR7737838 | MDR-TB | lineage2.2.1 | None | SRR22251103 | HR-TB | lineage2.2.1 | None | SRR29053445 | MDR-TB | lineage2.2.1 | None | SRR1723472 | MDR-TB | lineage2.2.1 | None | SRR15315983 | MDR-TB | lineage2.2.1 | None | ERR13290585 | MDR-TB | lineage2.2.1 | None | SRR29017287 | HR-TB | lineage2.2.1 | None | SRR26400097 | HR-TB | lineage2.2.1 | None | ERR13291526 | Sensitive | lineage2.2.1 | None | ERR4811632 | Sensitive | lineage2.2.1 | None | SRR1166820 | MDR-TB | lineage2.2.1 | None | SRR30180437 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515292 | Other | lineage2.2.1 | None | SRR21676424 | Sensitive | lineage2.2.1 | None | SRR6397474 | HR-TB | lineage2.2.1 | ca | SRR28351488 | MDR-TB | lineage2.2.1 | None | SRR6397499 | HR-TB | lineage2.2.1 | ca | SRR6397370 | HR-TB | lineage2.2.1 | ca | SRR6153271 | HR-TB | lineage2.2.1 | ca | SRR6397495 | HR-TB | lineage2.2.1 | ca | SRR20969982 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514419 | Sensitive | lineage4.1.2.1 | gb | ERR2514423 | Sensitive | lineage4.1.2.1 | gb | SRR6824628 | MDR-TB | lineage2.2.1 | cn | SRR6824573 | MDR-TB | lineage2.2.1 | cn | SRR15368748 | MDR-TB | lineage2.2.1 | None | DRR185088 | Sensitive | lineage2.2.1 | vn | SRR21732451 | Sensitive | lineage2.2.1 | None | DRR184623 | HR-TB | lineage2.2.1 | vn | DRR184641 | HR-TB | lineage2.2.1 | vn | DRR184907 | HR-TB | lineage2.2.1 | vn | DRR184895 | MDR-TB | lineage2.2.1 | vn | DRR184931 | HR-TB | lineage2.2.1 | vn | DRR184946 | HR-TB | lineage2.2.1 | vn | DRR184956 | HR-TB | lineage2.2.1 | vn | DRR184960 | HR-TB | lineage2.2.1 | vn | DRR184963 | HR-TB | lineage2.2.1 | vn | DRR184983 | HR-TB | lineage2.2.1 | vn | SRR14801419 | Sensitive | lineage4.8 | None | ERR9119431 | HR-TB | lineage2.2.1 | None | SRR16370552 | MDR-TB | lineage2.2.1 | None | SRR26937116 | MDR-TB | lineage2.2.1;lineage4 | None | ERR4810548 | Sensitive | lineage2.2.1 | cn | ERR4810771 | Other | lineage2.2.1 | cn | SRR16089627 | HR-TB | lineage2.2.1 | None | ERR4820729 | Sensitive | lineage2.2.1 | None | ERR4811365 | MDR-TB | lineage2.2.1 | cn | SRR26936926 | MDR-TB | lineage2.2.1 | None | SRR26399525 | HR-TB | lineage2.2.1 | None | SRR20969563 | Sensitive | lineage2.2.1 | None | ERR10465751 | Sensitive | lineage2.2.1 | None | ERR654966 | HR-TB | lineage2.2.1;lineage4.3.3 | None | SRR21747043 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662208 | MDR-TB | lineage2.2.1 | None | SRR8651618 | Pre-XDR-TB | lineage2.2.1 | cn | SRR26936968 | MDR-TB | lineage2.2.1 | None | ERR2514027 | Sensitive | lineage4.1.2.1 | None | ERR9124897 | HR-TB | lineage2.2.1 | None | ERR7737845 | MDR-TB | lineage2.2.1 | None | SRR15316370 | MDR-TB | lineage2.2.1 | None | SRR30182378 | Sensitive | lineage2.2.1 | None | SRR25207322 | MDR-TB | lineage2.2.1 | None | ERR552549 | HR-TB | lineage2.2.1 | None | SRR6824572 | MDR-TB | lineage2.2.1 | None | SRR21276917 | MDR-TB | lineage2.2.1 | None | SRR26936953 | MDR-TB | lineage2.2.1 | None | SRR27450216 | Sensitive | lineage2.2.1 | None | ERR11067642 | MDR-TB | lineage2.2.1 | None | SRR10040317 | MDR-TB | lineage2.2.1 | None | SRR26937108 | MDR-TB | lineage2.2.1 | None | ERR13266100 | MDR-TB | lineage2.2.1 | None | SRR21691097 | HR-TB | lineage2.2.1 | None | SRR25207278 | MDR-TB | lineage2.2.1 | None | SRR11972298 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251743 | HR-TB | lineage2.2.1 | None | ERR768047 | HR-TB | lineage2.2.1 | th | ERR751776 | Sensitive | lineage2.2.1 | th | ERR7911187 | MDR-TB | lineage2.2.1 | vn | ERR7911316 | MDR-TB | lineage2.2.1 | vn | ERR7911493 | Pre-XDR-TB | lineage2.2.1 | vn | SAMN02414963 | MDR-TB | lineage2.2.1 | se | SRR21747031 | Pre-XDR-TB | lineage2.2.1 | None | ERR11067362 | Sensitive | lineage4.8 | None | SRR12739100 | Sensitive | lineage2.2.1 | None | ERR400444 | Sensitive | lineage2.2.1 | gb | ERR400331 | HR-TB | lineage2.2.1 | gb | ERR4831940 | MDR-TB | lineage2.2.1 | vn | ERR4831929 | HR-TB | lineage2.2.1 | vn | ERR4832066 | HR-TB | lineage2.2.1 | vn | ERR4831881 | HR-TB | lineage2.2.1 | vn | ERR4830444 | HR-TB | lineage2.2.1 | vn | ERR4828670 | HR-TB | lineage2.2.1 | vn | ERR4831611 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4831776 | MDR-TB | lineage2.2.1 | None | ERR4830329 | MDR-TB | lineage2.2.1 | None | SRR5709799 | Pre-XDR-TB | lineage2.2.1 | th | SAMEA2534726 | HR-TB | lineage2.2.1 | th | ERR13284853 | MDR-TB | lineage2.2.1 | None |
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