Rv3596c - c.687G>C
Drug resistance types
60 Sensitive
13 RR-TB
36 HR-TB
32 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9 | 72 |
| lineage2.2.1 | 16 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage3 | 6 |
| lineage4.1.2.1 | 2 |
| lineage2.2 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7;lineage4.9 | 9 |
| lineage4.1.1.3 | 5 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.8 | 6 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.2 | 3 |
| La1.8.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| 1 | |
| lineage4 | 3 |
| lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 1 |
| La1.6;lineage4 | 1 |
| La1.7 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.2 | 2 |
| lineage4.3;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| La1.7.1 | 1 |
| La2;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage3.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| M.canetti;lineage4.2 | 1 |
| lineage1.1.2 | 1 |
| La1.2.BCG | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.1.1.1 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 199 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR400529 | Other | lineage3 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR4817204 | Other | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1023509 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR473332 | Other | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351444 | MDR-TB | lineage3 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4817069 | RR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR1181256 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR323037 | Other | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR7496471 | Sensitive | lineage4 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1181349 | Sensitive | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR2432997 | Other | lineage4.8 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | ERR736831 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None |
|---|
