Rv3596c - c.2385G>T
Drug resistance types
6 Sensitive
4 RR-TB
29 HR-TB
12 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
75 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 10 |
| lineage4.9 | 41 |
| 17 | |
| lineage3.1.1 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage3.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.2.1;lineage3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.3 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 131 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184312 | Other | lineage2.2.1 | None | ERR212123 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR161037 | Other | lineage4.9 | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | SRR28119753 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR29016780 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341373 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4811105 | HR-TB | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR11466044 | Other | lineage4.1.1.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1196768 | MDR-TB | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1175074 | Other | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045526 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR502912 | Other | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4810741 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811311 | Other | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR29093909 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR9786843 | Other | None | ERR2514692 | Other | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR9786671 | Other | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | ERR4819241 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None |
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