Rv3596c - c.1956C>T
Drug resistance types
73 Sensitive
4 RR-TB
47 HR-TB
13 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
57 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 101 |
| lineage2.2.1 | 8 |
| lineage4.2;lineage4.9 | 2 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La1.7;lineage4.9 | 7 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La3;lineage4.9 | 6 |
| lineage3 | 4 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage6.1.1 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.8.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.8 | 2 |
| La3;lineage4.3.4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| 1 | |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.1.1 | 1 |
| La1;lineage4.9 | 1 |
| La1.4 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 195 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR926165 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR369158 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR29050859 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR373947 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961549 | Other | La1.2 | None | SRR1238558 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29096150 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR7361995 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR3675222 | Other | La1.7 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR25827728 | HR-TB | lineage1.1.2 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR29096198 | Sensitive | lineage1.1.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | ERR349296 | Sensitive | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None |
|---|
