Rv3596c - c.132T>C
Drug resistance types
103 Sensitive
6 RR-TB
51 HR-TB
9 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
121 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 6 |
| M.canetti | 68 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 3 |
| 14 | |
| La3;M.canetti | 10 |
| lineage3;lineage4.9 | 1 |
| lineage4.9 | 70 |
| lineage4.2;lineage4.9 | 3 |
| lineage4 | 6 |
| lineage4.9;lineage6.3 | 7 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La2;M.canetti | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La3;lineage1.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 294 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR10177260 | Other | M.canetti | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR266124 | Other | M.canetti | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR25827682 | Other | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3597003 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR313114 | Sensitive | M.canetti | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5818567 | Other | M.canetti | dj | ERR3597004 | Sensitive | M.canetti | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR5818614 | Sensitive | M.canetti | dj | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR10177261 | Sensitive | M.canetti | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10177259 | Other | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR313115 | Other | M.canetti | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR551057 | Other | M.canetti | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR9125480 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR29056248 | Sensitive | M.canetti | None | SRR28119753 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR400326 | Other | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR6045371 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | ERR2446382 | Other | lineage4 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR3597007 | Sensitive | M.canetti | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | ERR7451300 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | ERR9125475 | Other | M.canetti | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816019 | Sensitive | M.canetti | None | ERR266109 | Sensitive | M.canetti | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR552305 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR1043164 | Other | La3;M.canetti | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | ERR551180 | Sensitive | M.canetti | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | SRR10177262 | Sensitive | M.canetti | None | SRR3675221 | Other | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR1043163 | Other | La3;M.canetti | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR22179528 | Sensitive | M.canetti | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR5818685 | Sensitive | M.canetti | None | ERR266121 | Sensitive | M.canetti | None | SRR24061597 | Sensitive | M.canetti | None | SRR6046141 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3597005 | Sensitive | M.canetti | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR313116 | Sensitive | M.canetti | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4819927 | Sensitive | M.canetti | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR3597001 | Sensitive | M.canetti | None | SRR3675275 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4821046 | Sensitive | M.canetti | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR552304 | Sensitive | M.canetti | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3275450 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR16058668 | Sensitive | M.canetti | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR266107 | Other | M.canetti | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR551055 | Sensitive | M.canetti | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4815361 | Other | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR551056 | Sensitive | M.canetti | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR266110 | Other | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | ERR313113 | Other | M.canetti | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR3597002 | Other | M.canetti | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR1063855 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR266106 | Sensitive | M.canetti | None | SRR3675248 | Other | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR3675387 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675247 | Other | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR10177258 | Other | M.canetti | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | SRR5818676 | Other | M.canetti | dj | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR551182 | Sensitive | M.canetti | None | SRR24061598 | Sensitive | M.canetti | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None |
|---|
