Rv1918c - c.1544_1622delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Drug resistance types
190 Sensitive
1 RR-TB
6 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
19 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 160 |
| lineage4.3.3 | 8 |
| lineage4.1.1 | 2 |
| lineage4.5 | 7 |
| lineage4.6.2.2 | 6 |
| lineage1.2.2.2 | 2 |
| lineage4.4.2 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage4.3.2 | 5 |
| lineage6 | 8 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1 | 6 |
| lineage4.4.1.1 | 1 |
| lineage3 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2;lineage4.2.2.2 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 219 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16057912 | Sensitive | lineage4.8 | None | SRR2502826 | Sensitive | lineage4.8 | None | SRR16058386 | Sensitive | lineage4.8 | None | ERR13292047 | HR-TB | lineage4.3.3 | None | ERR13292345 | Other | lineage4.1.1 | None | SRR2502857 | Sensitive | lineage4.8 | None | SRR16058183 | Sensitive | lineage4.8 | None | ERR9125912 | Sensitive | lineage4.8 | None | SRR2502818 | Sensitive | lineage4.8 | None | SRR16058631 | Sensitive | lineage4.8 | None | SRR16058272 | Sensitive | lineage4.8 | None | SRR16058394 | Sensitive | lineage4.8 | None | SRR6067242 | Sensitive | lineage4.8 | ca | SRR21709613 | Other | lineage4.5 | None | SRR16058401 | Sensitive | lineage4.8 | None | ERR13291894 | Other | lineage4.5 | None | SRR2502823 | Sensitive | lineage4.8 | None | SRR2502853 | Sensitive | lineage4.8 | None | ERR9786895 | Other | lineage4.6.2.2 | None | SRR16058431 | Sensitive | lineage4.8 | None | ERR9125428 | Sensitive | lineage4.8 | None | SRR6061400 | Sensitive | lineage4.8 | ca | SRR16057893 | Sensitive | lineage4.8 | None | SRR16057894 | Sensitive | lineage4.8 | None | SRR16057906 | Sensitive | lineage4.8 | None | SRR16058449 | Sensitive | lineage4.8 | None | ERR13276186 | Other | lineage4.5 | None | ERR9125530 | Sensitive | lineage4.8 | None | ERR9125202 | Sensitive | lineage4.8 | None | ERR9125514 | Sensitive | lineage4.8 | None | SRR2502819 | Sensitive | lineage4.8 | None | SRR1187442 | Sensitive | lineage4.8 | ca | ERR9786587 | Sensitive | lineage4.6.2.2 | None | SRR16058238 | Sensitive | lineage4.8 | None | SRR16058672 | Sensitive | lineage4.8 | None | SRR2502833 | Sensitive | lineage4.8 | None | SRR2502813 | Sensitive | lineage4.8 | None | SRR6074057 | Sensitive | lineage4.8 | ca | SRR16058063 | Sensitive | lineage4.8 | None | SRR16058334 | Sensitive | lineage4.8 | None | SRR29052944 | Other | lineage1.2.2.2 | None | SRR2502851 | Sensitive | lineage4.8 | None | SRR28409484 | Sensitive | lineage4.3.3 | None | SRR29053426 | Sensitive | lineage4.4.2 | None | ERR9125477 | HR-TB | lineage4.8 | None | SRR16058458 | Sensitive | lineage1.2.1.2.1 | None | SRR21686111 | Sensitive | lineage4.5 | None | ERR9125210 | Sensitive | lineage4.8 | None | ERR9125573 | Sensitive | lineage4.8 | None | SRR18911868 | Other | lineage4.1.1 | None | ERR4195855 | Sensitive | lineage4.3.2 | None | SRR16058319 | Sensitive | lineage4.8 | None | ERR3804131 | Sensitive | lineage6 | None | SRR16058089 | Sensitive | lineage4.8 | None | SRR16058395 | Sensitive | lineage4.8 | None | SRR6061414 | Sensitive | lineage4.8 | ca | SRR16057891 | Sensitive | lineage4.8 | None | ERR9124972 | Sensitive | lineage4.8 | None | ERR9125227 | Sensitive | lineage4.8 | None | ERR9125220 | Sensitive | lineage4.8 | None | ERR9125222 | Sensitive | lineage4.8 | None | SRR2502822 | Sensitive | lineage4.8 | None | SRR1640345 | Sensitive | lineage4.8 | ca | SRR2502841 | Sensitive | lineage4.8 | None | ERR9125505 | Sensitive | lineage4.8 | None | ERR9125602 | Sensitive | lineage4.8 | None | SRR6896216 | Sensitive | lineage4.3.2 | None | SRR6067261 | Sensitive | lineage4.8 | ca | ERR9125264 | Sensitive | lineage4.8 | None | ERR9125219 | Sensitive | lineage4.8 | None | SRR16057975 | Sensitive | lineage4.8 | None | ERR9786543 | Sensitive | lineage4.1.2.1 | None | ERR9125762 | Sensitive | lineage4.8 | None | ERR9125650 | Sensitive | lineage4.8 | None | ERR9787122 | Sensitive | lineage6 | None | ERR9125348 | Sensitive | lineage4.8 | None | ERR9125648 | Sensitive | lineage4.8 | None | SRR16058641 | Sensitive | lineage4.8 | None | SRR21675946 | Sensitive | lineage4.3.3 | None | SRR21709858 | Sensitive | lineage2.2.1 | None | SRR21710586 | Sensitive | lineage4.8 | None | ERR13291924 | Sensitive | lineage2.2.1 | None | ERR9125402 | Sensitive | lineage4.8 | None | SRR2502836 | Sensitive | lineage4.8 | None | SRR16058120 | Sensitive | lineage4.8 | None | SRR16058234 | Sensitive | lineage4.8 | None | ERR9786333 | Sensitive | lineage4.6.2.2 | None | SRR16058643 | Sensitive | lineage4.8 | None | ERR9125503 | Sensitive | lineage4.8 | None | SRR29053604 | Sensitive | lineage4.3.3 | None | SRR2502811 | Sensitive | lineage4.8 | None | SRR2502812 | Sensitive | lineage4.8 | None | SRR2502855 | Sensitive | lineage4.8 | None | ERR9125152 | Sensitive | lineage4.8 | None | SRR6064852 | Sensitive | lineage4.8 | ca | ERR3804019 | Sensitive | lineage6 | None | SRR16057898 | Sensitive | lineage4.8 | None | ERR9125251 | Sensitive | lineage4.8 | None | ERR9125639 | Sensitive | lineage4.8 | None | ERR9125512 | Sensitive | lineage4.8 | None | SRR16058489 | Sensitive | lineage4.8 | None | SRR6458407 | MDR-TB | lineage2.2.1 | None | ERR9125315 | Sensitive | lineage4.8 | None | SRR6067266 | Sensitive | lineage4.8 | ca | SRR1640697 | Sensitive | lineage4.8 | ca | ERR3800998 | Sensitive | lineage6 | None | ERR9125706 | Sensitive | lineage4.8 | None | ERR9125045 | Sensitive | lineage4.8 | None | ERR551161 | Sensitive | lineage4.8 | None | ERR9125114 | Sensitive | lineage4.8 | None | ERR9125276 | Sensitive | lineage4.8 | None | ERR9125623 | Sensitive | lineage4.8 | None | SRR6074059 | Sensitive | lineage4.8 | None | SRR16058419 | Sensitive | lineage4.8 | None | SRR16151372 | Other | lineage4.4.1.1 | None | ERR9125323 | Sensitive | lineage4.8 | None | ERR9125611 | Sensitive | lineage4.8 | None | SRR16057911 | Sensitive | lineage4.8 | None | SRR16058671 | HR-TB | lineage4.8 | None | ERR4195859 | Sensitive | lineage4.3.2 | None | SRR6061394 | Sensitive | lineage4.8 | ca | SRR2502817 | Sensitive | lineage4.8 | None | SRR2502835 | Sensitive | lineage4.8 | None | SRR16058038 | Sensitive | lineage4.8 | None | SRR21658765 | Other | lineage1.2.2.2 | None | ERR9125399 | Other | lineage4.8 | None | SRR1640569 | Sensitive | lineage4.8 | ca | ERR9125881 | Sensitive | lineage4.8 | None | ERR9125326 | Sensitive | lineage4.8 | None | ERR9125451 | Sensitive | lineage4.8 | None | SRR15014757 | HR-TB | lineage3 | None | SRR16058633 | Sensitive | lineage4.8 | None | SRR21710677 | Sensitive | lineage4.5 | None | SRR16057965 | Sensitive | lineage4.8 | None | SRR2502827 | Sensitive | lineage4.8 | None | ERR9125619 | Sensitive | lineage4.8 | None | ERR9121487 | Sensitive | lineage4.3.2 | None | SRR2502849 | Sensitive | lineage4.8 | None | SRR6061408 | Sensitive | lineage4.8 | ca | SRR6067270 | Sensitive | lineage4.8 | ca | SRR2502837 | Sensitive | lineage4.8 | None | SRR16058341 | Sensitive | lineage4.8 | None | SRR1640701 | Sensitive | lineage4.8 | ca | ERR13232611 | MDR-TB | lineage2.2.1 | None | SRR29056188 | RR-TB | lineage1.1.3.1 | None | SRR6458438 | Pre-XDR-TB | lineage2.2.1 | None | SRR1190432 | Sensitive | lineage4.8 | ca | SRR2502843 | Sensitive | lineage4.8 | None | ERR9125201 | Sensitive | lineage4.8 | None | SRR16058276 | Sensitive | lineage4.8 | None | ERR9786721 | Other | lineage4.6.2.2 | None | SRR16058305 | Sensitive | lineage4.8 | None | ERR9125691 | Sensitive | lineage4.8 | None | SRR16057888 | Sensitive | lineage4.8 | None | SRR2502829 | Sensitive | lineage4.8 | None | SRR16058577 | Sensitive | lineage4.8 | None | ERR3799594 | Other | lineage4.6.2.2 | None | SRR1640696 | Sensitive | lineage4.8 | ca | SRR6896193 | Other | lineage4.1.2 | None | SRR16058571 | Sensitive | lineage4.8 | None | SRR2502815 | Sensitive | lineage4.8 | None | SRR2502845 | Sensitive | lineage4.8 | None | ERR9787148 | Sensitive | lineage6 | None | ERR9125396 | Sensitive | lineage4.8 | None | ERR3804115 | Sensitive | lineage6 | None | ERR13291994 | Sensitive | lineage4.8 | None | SRR16058421 | Sensitive | lineage4.8 | None | ERR9786590 | Other | lineage4.6.2.2 | None | DRR188940 | Other | lineage2.2.1 | None | SRR21709624 | Sensitive | lineage4.3.3 | None | ERR9787135 | Sensitive | lineage6 | None | SRR16058337 | Other | lineage4.8 | None | ERR13291878 | Sensitive | lineage4.3.3 | None | SRR2502830 | Sensitive | lineage4.8 | None | ERR13292006 | Sensitive | lineage4.5 | None | ERR9125232 | Sensitive | lineage4.8 | None | SRR1640571 | Sensitive | lineage4.8 | None | SRR16058199 | Sensitive | lineage4.8 | None | SRR16058406 | Sensitive | lineage4.8 | None | ERR9125225 | Sensitive | lineage4.8 | None | ERR9125536 | Sensitive | lineage4.8 | None | ERR9125256 | Sensitive | lineage4.8 | None | SRR2502831 | Sensitive | lineage4.8 | None | SRR16057915 | Sensitive | lineage4.8 | None | SRR2502825 | Sensitive | lineage4.8 | None | SRR8380898 | Sensitive | lineage1.1.2 | in | ERR9121491 | Sensitive | lineage4.3.2 | None | ERR9125874 | Sensitive | lineage1.2.1.2.1 | None | SRR2502854 | Sensitive | lineage4.8 | None | ERR9125795 | Sensitive | lineage4.8 | None | SRR6936675 | Other | lineage4.1.2 | None | ERR552685 | Sensitive | lineage4.7 | None | SRR2502824 | Sensitive | lineage4.8 | None | ERR9125226 | Sensitive | lineage4.8 | None | ERR9125416 | Sensitive | lineage4.8 | None | ERR9125267 | Sensitive | lineage4.8 | None | SRR6982231 | Sensitive | lineage4.1.2;lineage4.2.2.2 | None | SRR6067241 | Sensitive | lineage4.8 | ca | ERR9125286 | Sensitive | lineage4.8 | None | SRR2502821 | Sensitive | lineage4.8 | None | SRR22424911 | HR-TB | lineage3 | None | SRR16058598 | Sensitive | lineage4.8 | None | ERR9896139 | Other | lineage4.3.4.2 | None | SRR2502820 | Sensitive | lineage4.8 | None | ERR9787173 | Sensitive | lineage6 | None | SRR16057897 | Sensitive | lineage4.8 | None | ERR9891973 | Sensitive | lineage4.1.2.1 | None | DRR188796 | Other | lineage4.5 | None | SRR16058547 | Sensitive | lineage4.8 | None | SRR16058727 | Sensitive | lineage4.8 | None | SRR1640713 | Sensitive | lineage4.8 | ca | SRR2502832 | Sensitive | lineage4.8 | None | ERR9125392 | Sensitive | lineage4.8 | None | SRR16057956 | Sensitive | lineage4.8 | None | SRR16057896 | Sensitive | lineage4.8 | None | SRR1640706 | Sensitive | lineage4.8 | ca | SRR16058150 | Sensitive | lineage4.8 | None | SRR19325664 | Sensitive | lineage4.3.3 | None | SRR16101273 | HR-TB | lineage4.3.3 | None |
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