Rv1630 - c.555G>C
Drug resistance types
55 Sensitive
14 RR-TB
34 HR-TB
20 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.9 | 78 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| La3;lineage4.9 | 8 |
| 12 | |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.9 | 11 |
| lineage4.1.1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage3 | 4 |
| lineage2.2.1 | 17 |
| lineage2.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.2.1 | 1 |
| lineage1;lineage4.9 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 8 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.3.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| La1.2.BCG | 2 |
| lineage4.9;lineage7 | 4 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2 | 1 |
| lineage4 | 3 |
| La1.2;La1.8.1 | 1 |
| lineage4.2.2.2 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.1.3 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 2 |
| lineage4.8.1 | 2 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.4 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage2;lineage4 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.5 | 1 |
| lineage4.6.2.2 | 1 |
| La1.7.1 | 1 |
| lineage2.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 225 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR736831 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675275 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR1915479 | Other | La1.2.BCG | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR7496517 | Other | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR4816999 | Other | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR3675247 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR10796578 | Other | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | ERR4817060 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1173778 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18213713 | HR-TB | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR3675236 | Other | None | ERR176779 | HR-TB | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR473332 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR6044835 | Other | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR10796565 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | SRR1049672 | Other | lineage3 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6789626 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None |
|---|
