Rv0006 - c.60C>T
Drug resistance types
106 Sensitive
3 RR-TB
29 HR-TB
23 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
91 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 5 |
| lineage2.1 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9 | 20 |
| lineage4.1.2.1 | 107 |
| lineage4.3.2;lineage4.9 | 1 |
| 18 | |
| lineage2.1;lineage4.9 | 11 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 7 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage3 | 13 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3;lineage4.8 | 2 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1;lineage6.1.3 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;lineage4.9 | 6 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.4.1.1 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.7 | 1 |
| lineage4 | 1 |
| lineage4.1.2.1;lineage4.6.2.2 | 1 |
| lineage4.1.3 | 2 |
| La3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1.2.1;lineage6.1 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 256 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR502908 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR21690954 | Sensitive | lineage4.1.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR11050345 | Sensitive | lineage4.1.2.1 | None | ERR1465829 | Sensitive | lineage4.1.2.1 | er | ERR3287751 | Sensitive | lineage4.1.2.1 | pe | ERR4829721 | Sensitive | lineage4.1.2.1 | it | ERR9786278 | Sensitive | lineage4.1.2.1 | None | SRR1173363 | Other | None | SRR17234881 | MDR-TB | lineage4.1.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR9786219 | Sensitive | lineage4.1.2.1 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR9121542 | Sensitive | lineage4.1.2.1 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | ERR13261206 | Sensitive | lineage3 | None | ERR4195759 | Sensitive | lineage4.1.2.1 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR9786894 | Sensitive | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3275652 | Sensitive | lineage4.1.2.1 | nl | SRR20969677 | HR-TB | La3;lineage2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3806854 | Sensitive | lineage4.1.2.1 | None | SRR1162745 | MDR-TB | lineage4.1.2.1 | None | ERR4195526 | Sensitive | lineage4.1.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR1162699 | Sensitive | lineage4.1.2.1 | None | ERR9786417 | Sensitive | lineage4.1.2.1 | None | ERR9786758 | Sensitive | lineage4.1.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR18665475 | Sensitive | lineage4.1.2.1 | None | ERR3275232 | Sensitive | lineage4.1.2.1 | nl | ERR11049844 | Sensitive | lineage4.1.2.1 | None | SRR28394304 | MDR-TB | lineage4.1.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR9787095 | Other | lineage4.1.2.1;lineage6.1.3 | None | ERR9121558 | Sensitive | lineage4.1.2.1 | None | ERR4798223 | Other | lineage4.1.2.1 | in | ERR11043691 | Sensitive | lineage4.1.2.1 | None | SRR29093536 | HR-TB | lineage4.1.2.1 | None | ERR4816999 | Other | None | ERR4815518 | Sensitive | lineage4.1.2.1 | None | SRR17234882 | MDR-TB | lineage4.1.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR11050693 | Sensitive | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4195590 | Sensitive | lineage4.1.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR26112755 | Sensitive | lineage4.1.2.1 | None | ERR4815464 | Sensitive | lineage4.1.2.1 | None | ERR9786833 | Sensitive | lineage4.1.2.1 | None | SRR7069980 | Sensitive | lineage4.1.2.1 | None | ERR4800341 | Other | lineage3 | None | SRR21732494 | Sensitive | lineage4.1.2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR13290332 | Sensitive | lineage4.1.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR9121648 | Sensitive | lineage4.1.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4195520 | Sensitive | lineage4.1.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR29230862 | Sensitive | lineage3 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR11067608 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR1184381 | MDR-TB | None | ERR4814352 | Other | lineage2.2.1 | None | SAMN02231158 | MDR-TB | lineage4.1.2.1 | ml | ERR2516275 | Sensitive | lineage4.1.2.1 | be | ERR2517565 | Sensitive | lineage4.1.2.1 | nl | ERR9786604 | Other | None | SRR1167384 | Other | La3;lineage4.9 | None | DRR261133 | MDR-TB | lineage4.1.2.1 | None | ERR12910332 | Sensitive | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4195581 | Sensitive | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1173778 | Other | lineage4.9 | None | ERR11050280 | Sensitive | lineage4.1.2.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR22249613 | Sensitive | lineage3 | None | ERR9121319 | Sensitive | lineage4.1.2.1 | None | ERR9121661 | Sensitive | lineage4.1.2.1 | None | ERR11082740 | Sensitive | lineage4.1.2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR2446289 | Sensitive | lineage4.1.2.1 | nl | ERR8774346 | Sensitive | lineage4.1.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR9786498 | Sensitive | lineage4.1.2.1 | None | SRR1169194 | Other | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2446087 | Sensitive | lineage4.1.2.1 | nl | SRR1162476 | MDR-TB | lineage4.1.2.1 | None | ERR11049471 | Sensitive | lineage4.1.2.1 | None | SRR1196494 | MDR-TB | None | ERR11049338 | Sensitive | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR13290330 | Sensitive | lineage4.1.2.1 | None | ERR1200662 | Sensitive | lineage4.1.2.1 | et | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786631 | Sensitive | lineage4.1.2.1 | None | SRR30182279 | Sensitive | lineage4.1.2.1 | None | SRR29126314 | Sensitive | lineage4.1.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR14782406 | Sensitive | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR3732704 | Sensitive | lineage4.1.2.1;lineage4.6.2.2 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR1172728 | RR-TB | La3 | None | ERR13267675 | Sensitive | lineage4.1.2.1 | None | SRR29440782 | Sensitive | lineage3 | None | ERR9117709 | Other | None | SRR1172817 | Other | La3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR29124331 | Sensitive | lineage4.1.2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR13292305 | Sensitive | lineage4.1.2.1 | None | ERR9786962 | Sensitive | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR9786293 | Sensitive | lineage4.1.2.1;lineage6.1 | None | ERR1200616 | Sensitive | lineage4.1.2.1 | et | SRR6398060 | Sensitive | lineage4.1.2.1 | ca | ERR212033 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4817060 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR22251656 | Sensitive | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR2101058 | Sensitive | lineage4.1.2.1 | None | ERR4815615 | Sensitive | lineage3 | gb | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR28393561 | MDR-TB | lineage4.1.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28859742 | Sensitive | lineage4.1.2.1 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR28393950 | MDR-TB | lineage4.1.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR3276180 | Sensitive | lineage4.1.2.1 | nl | ERR3275717 | Sensitive | lineage4.1.2.1 | nl | ERR4799022 | Sensitive | lineage3 | in | ERR3275729 | Sensitive | lineage4.1.2.1 | nl | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR21690861 | Sensitive | lineage4.1.2.1 | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11049743 | Sensitive | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3732714 | Sensitive | lineage4.1.2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR7070490 | Sensitive | lineage3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR27332332 | Sensitive | lineage4.1.2.1 | None | SRR22048494 | Sensitive | lineage4.1.2.1 | None | SRR29124306 | Sensitive | lineage4.1.2.1 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR29356607 | Sensitive | lineage4.1.2.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR19303859 | Sensitive | lineage4.1.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR29127022 | Sensitive | lineage4.1.2.1 | None | ERR2145505 | Sensitive | lineage4.1.2.1 | None | SRR6789626 | Other | None | SAMN02414845 | Sensitive | lineage4.1.2.1 | se | SRR1196546 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR10680209 | MDR-TB | lineage4.1.2.1 | None | SRR27332321 | Sensitive | lineage4.1.2.1 | None | ERR11044799 | Sensitive | lineage4.1.2.1 | None | SRR3675236 | Other | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR1166713 | Sensitive | lineage4.1.2.1 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR30182752 | Sensitive | lineage3 | None | SRR7535086 | Other | None | ERR11050804 | Sensitive | lineage4.1.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR24222939 | Sensitive | lineage4.1.2.1 | None | ERR9786651 | Sensitive | lineage4.1.2.1 | None | ERR9786875 | Sensitive | lineage4.1.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR28119827 | Other | La3;lineage4.9 | None | ERR9786240 | Sensitive | lineage4.1.2.1 | None | SRR21732784 | Sensitive | lineage3 | None | ERR176751 | Other | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3803999 | Sensitive | lineage4.1.2.1 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR1103453 | MDR-TB | lineage4.1.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR9786467 | Sensitive | lineage4.1.2.1 | None | ERR294270 | Sensitive | lineage4.1.2.1 | None | ERR3470689 | Sensitive | lineage4.1.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR4800041 | Sensitive | lineage3 | in | SRR22048459 | Sensitive | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR27332295 | Sensitive | lineage4.1.2.1 | None | SRR28044738 | Sensitive | lineage3 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR6398129 | Sensitive | lineage4.1.2.1 | ca | SRR1172857 | Other | None | ERR9787197 | Other | None |
|---|
