Rv0006 - c.222C>A
Drug resistance types
19 Sensitive
0 RR-TB
34 HR-TB
9 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| 14 | |
| lineage4.9 | 39 |
| lineage2.1;lineage4.9 | 9 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 6 |
| lineage3.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 7 |
| lineage3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.3 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 4 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage1.1;lineage4 | 1 |
| lineage3.1.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.9;lineage7 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.6 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.7 | 1 |
| lineage4.8 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6 | 1 |
| M.canetti;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 141 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4815752 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR702406 | Other | lineage2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR28119827 | Other | La3;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR3675311 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9787197 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR9786604 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR181887 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9117721 | HR-TB | None | SRR7535086 | Other | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR11268038 | Other | La1.6 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR176651 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR7496517 | Other | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786569 | Other | lineage4.8 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None |
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