Rv0006 - c.-188C>G
Drug resistance types
17 Sensitive
2 RR-TB
47 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 58 |
| lineage2.2.1 | 3 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.3.4 | 2 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1;lineage4.8.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage1.2.1.2 | 1 |
| lineage4.8 | 2 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 113 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR971389 | Sensitive | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736848 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR13290676 | Sensitive | lineage1.2.1.2 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR926163 | Other | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None |
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