Rv0005 - c.1959C>T
Drug resistance types
32 Sensitive
0 RR-TB
5 HR-TB
4 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage1;lineage4.9 | 1 |
| La1.8.1 | 7 |
| lineage4.8 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| La3 | 5 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage1.1.3.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1 | 6 |
| La1.7 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1;lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| 1 | |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.3.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 73 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675477 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR4019484 | Other | La1.8.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR11067961 | Other | La1.8.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR13267604 | Sensitive | La3 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR11043390 | Sensitive | La3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1792045 | Other | La1.8.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1792120 | Other | La1.8.1 | None | ERR11050970 | Sensitive | La3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR1792077 | Other | La1.8.1 | None | ERR4830353 | Other | La1.7 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR1792042 | Other | La1.8.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR234659 | Other | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR22249811 | Sensitive | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1791901 | Other | La1.8.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR2512788 | Sensitive | La3 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR11138636 | Sensitive | lineage2.2.1 | None | SRR10040534 | MDR-TB | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR11081198 | Other | La3 | None | SRR3675387 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None |
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