EBG00000313339 - n.638_649delCTCTCCGGAGGA
Drug resistance types
17 Sensitive
1 RR-TB
4 HR-TB
1 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
18 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 4 |
| La3;lineage4 | 1 |
| lineage4.9 | 12 |
| La3;lineage4.9 | 6 |
| lineage2.2.1.2 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage6.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage5.2 | 2 |
| La1.8.1 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| 1 | |
| M.canetti;lineage2.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 46 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR12015084 | Other | lineage4.8 | None | ERR3283028 | Other | La3;lineage4 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR4798099 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR5341453 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR12015085 | Other | lineage4.8 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR9786843 | Other | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None |
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