EBG00000313339 - n.2680C>T
Drug resistance types
18 Sensitive
40 RR-TB
12 HR-TB
58 MDR-TB
33 Pre-XDR-TB
1 XDR-TB
170 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 6 |
| lineage4.6.1.1 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.5 | 3 |
| La1.6 | 2 |
| lineage4.9 | 61 |
| lineage2.2.1 | 72 |
| lineage4.2.1 | 11 |
| lineage4.3.4.2.1 | 9 |
| lineage4.1.2.1 | 17 |
| lineage3 | 20 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.3.4.1 | 3 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.8 | 17 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.3 | 13 |
| lineage1.1.3.3 | 1 |
| La1.2 | 2 |
| lineage1.2.1.1 | 1 |
| La1.8.1 | 10 |
| lineage4.3.4.2 | 4 |
| lineage4.4.1.1 | 4 |
| La1.7.1 | 3 |
| lineage4.9.1 | 2 |
| lineage4.3.2.1 | 3 |
| lineage3;lineage4 | 1 |
| lineage5.1.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage3.1.1 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4 | 3 |
| lineage4.4.2 | 5 |
| lineage2.2;lineage4 | 1 |
| lineage4.7 | 2 |
| lineage4.2.1.1 | 2 |
| lineage3.1.3 | 1 |
| lineage4.3.2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.2.2 | 5 |
| lineage4.1.1.3.1 | 2 |
| 1 | |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.3 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.4 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 332 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4817826 | Other | lineage4.5 | None | SRR10993953 | Other | La1.6 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173185 | Other | lineage4.9 | None | SRR1173450 | Other | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR7646014 | MDR-TB | lineage4.2.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR7068971 | Sensitive | lineage3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR3675513 | Other | lineage4.8 | None | SRR11342669 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR4769553 | Sensitive | lineage4.9 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR5818460 | Other | lineage4.9 | None | ERR176718 | Sensitive | lineage2.2.1;lineage4 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR9738475 | Sensitive | lineage4.3.3 | None | ERR3470691 | MDR-TB | lineage3 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | DRR184932 | Other | lineage2.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4769503 | Other | La1.2 | None | SRR7070293 | Other | lineage4.8 | None | ERR4817555 | Sensitive | lineage3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR5087846 | Other | La1.8.1 | None | ERR3468613 | Other | La1.8.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820742 | Sensitive | lineage4.3.4.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR5818462 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR13180301 | HR-TB | lineage3 | None | ERR10796588 | Other | lineage4.3.3 | None | SRR30180267 | MDR-TB | lineage4.5 | None | SRR1792011 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | ERR216928 | Other | lineage4.9.1 | None | ERR6197028 | Sensitive | lineage4.9 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR12062550 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR10796568 | Other | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR19304035 | Other | lineage4.1.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR10796566 | Other | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR7070144 | Other | lineage4.8 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR3283009 | Other | La1.8.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR4818825 | HR-TB | lineage4.1.2.1 | None | SRR1172075 | Pre-XDR-TB | lineage3 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1238559 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4817204 | Other | lineage4.9 | None | ERR216901 | Other | lineage3.1.1 | None | SRR14782707 | Other | lineage2.2.1 | None | SRR5818385 | Other | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR1049672 | Other | lineage3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7070521 | Other | lineage4.2.1.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | DRR184629 | Other | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4829333 | Other | lineage4 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR5087596 | Other | La1.8.1 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR19303917 | Sensitive | lineage2.2.1 | None | SRR6896288 | Sensitive | lineage4.3.2.1 | None | SRR3675509 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002875 | MDR-TB | lineage2.2.2;lineage4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR5311077 | Other | La1.8.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR1792025 | Other | La1.8.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR6046020 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR5818408 | Other | lineage4.9 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR4821054 | Sensitive | lineage3 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4187652 | Other | lineage4.9 | None | ERR4816464 | Other | lineage3 | None | SRR19303899 | Other | lineage3 | None | SRR1238557 | Other | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR4817069 | RR-TB | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR5818388 | Other | lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR7645928 | Other | lineage4.7 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR2851354 | Other | lineage4.9 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | ERR4818663 | Other | lineage3 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4818489 | Other | lineage1.1.3.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR10796589 | Other | lineage4.9 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR867555 | Other | lineage3 | None | ERR10796581 | Other | lineage4.1.2 | None | SRR7069946 | Other | lineage4.8 | None | SRR7131196 | Other | lineage4.8 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR7645927 | Other | lineage4.8 | None | DRR184982 | Other | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR037504 | Other | lineage4.9.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR9787022 | Other | lineage6.1.3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR3324368 | RR-TB | lineage1.1.2 | None | ERR3470682 | Other | lineage3 | None | ERR4811708 | HR-TB | lineage4 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR5818386 | Other | lineage4.9 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR6338285 | Other | La1.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR22248487 | Pre-XDR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR4829208 | Other | lineage4.8 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR11465301 | Other | lineage4.3.4.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818464 | Other | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR3797074 | Sensitive | lineage4.9 | None | SRR14801720 | Other | lineage4.8 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR1792372 | Other | La1.8.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304094 | Other | lineage6 | None | ERR3468488 | Other | La1.8.1 | None | ERR3797024 | Sensitive | lineage4.9 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR6046655 | Other | lineage4.1.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR5818425 | Other | lineage4.9 | None | SRR7755657 | Other | lineage4.8 | None | ERR4817085 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818398 | Other | lineage4.9 | None |
|---|
