EBG00000313339 - n.1779C>T
Drug resistance types
11 Sensitive
2 RR-TB
33 HR-TB
14 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
104 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.3 | 7 |
| lineage4.9 | 47 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 8 |
| lineage4.1.2.1 | 6 |
| lineage2.1 | 3 |
| lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1 | 10 |
| lineage2.2.1;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage5.2 | 2 |
| La3 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage3 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.1 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| 12 | |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| La3;lineage2.2.1 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.1 | 1 |
| La1.2 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage4.2 | 1 |
| La1.2.BCG | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.8 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.2.2 | 2 |
| lineage4.1.1.3 | 2 |
| La3;lineage4.8 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 171 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR1196677 | Other | lineage2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368973 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR161037 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | SRR1175049 | Other | lineage4.8;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1172234 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR4407452 | Other | lineage3 | None | SRR28119752 | Other | lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR6964493 | Sensitive | lineage3.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR28351341 | Other | lineage4.1.1.1 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1173363 | Other | None | SRR1196566 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1173562 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | SRR1175074 | Other | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR176741 | Other | lineage4.9 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR1196494 | MDR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | SRR26399265 | Other | lineage2.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR6198317 | Other | La1.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR29016780 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR12268496 | Sensitive | lineage4.4.1.1 | None | SRR1184372 | MDR-TB | None | SRR1173633 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6046141 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR22249687 | Sensitive | lineage4.8 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR29093099 | MDR-TB | La3;lineage2.2.2 | None | SRR1173706 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR11466174 | Other | lineage4.8 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR1173400 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1184294 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR6789621 | Other | lineage4.9 | None | SRR1173153 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR9786440 | Other | lineage4.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None |
|---|
